README.md

metadata

tags:
  - ChromBPNet
  - deep-learning
  - genomics
  - ATAC-seq
  - pituitary
  - mouse

Mouse (mm10 - P40) Stem cells ChromBPNet Model

Description

ChromBPNet model trained on mouse pituitary Stem cell ATAC-seq data (mm10).

Files

• models/chrombpnet.h5 — Full ChromBPNet model
• models/chrombpnet_nobias.h5 — ChromBPNet model without bias correction
• models/bias_model_scaled.h5 — Scaled Tn5 bias model

Training Details

• Genome: mm10
• Cell type: Stem cells
• Data type: scATAC-seq
• Bias model used: Tn5-bias-mm10-adult/bias.h5
• Framework: ChromBPNet

Context

Part of a ChromBPNet atlas of mouse pituitary cell types.

Bias correction was performed using the corresponding bias model: Pituitary ChromBPNet - Bias models

See the full atlas: Pituitary ChromBPNet - Mouse Single Cell Models