---
tags:
- ChromBPNet
- deep-learning
- genomics
- ATAC-seq
- pituitary
- mouse
---

# Mouse (mm10 - P40) Stem cells ChromBPNet Model

## Description
ChromBPNet model trained on mouse pituitary Stem cell ATAC-seq data (mm10).

## Files
- `models/chrombpnet.h5` — Full ChromBPNet model
- `models/chrombpnet_nobias.h5` — ChromBPNet model without bias correction
- `models/bias_model_scaled.h5` — Scaled Tn5 bias model

## Training Details
- **Genome:** mm10
- **Cell type:** Stem cells
- **Data type:** scATAC-seq
- **Bias model used:** Tn5-bias-mm10-adult/bias.h5
- **Framework:** [ChromBPNet](https://github.com/kundajelab/chrombpnet)

## Context
Part of a ChromBPNet atlas of mouse pituitary cell types.

Bias correction was performed using the corresponding bias model: [Pituitary ChromBPNet - Bias models](https://huggingface.co/collections/ge8rgia)

See the full atlas: [Pituitary ChromBPNet - Mouse Single Cell Models](https://huggingface.co/collections/ge8rgia)