Daily Papers

This paper introduces JurisTCU, a Brazilian Portuguese dataset for legal information retrieval (LIR). The dataset is freely available and consists of 16,045 jurisprudential documents from the Brazilian Federal Court of Accounts, along with 150 queries annotated with relevance judgments. It addresses the scarcity of Portuguese-language LIR datasets with query relevance annotations. The queries are organized into three groups: real user keyword-based queries, synthetic keyword-based queries, and synthetic question-based queries. Relevance judgments were produced through a hybrid approach combining LLM-based scoring with expert domain validation. We used JurisTCU in 14 experiments using lexical search (document expansion methods) and semantic search (BERT-based and OpenAI embeddings). We show that the document expansion methods significantly improve the performance of standard BM25 search on this dataset, with improvements exceeding 45% in P@10, R@10, and nDCG@10 metrics when evaluating short keyword-based queries. Among the embedding models, the OpenAI models produced the best results, with improvements of approximately 70% in P@10, R@10, and nDCG@10 metrics for short keyword-based queries, suggesting that these dense embeddings capture semantic relationships in this domain, surpassing the reliance on lexical terms. Besides offering a dataset for the Portuguese-language IR research community, suitable for evaluating search systems, the results also contribute to enhancing a search system highly relevant to Brazilian citizens.

This study introduces Query Attribute Modeling (QAM), a hybrid framework that enhances search precision and relevance by decomposing open text queries into structured metadata tags and semantic elements. QAM addresses traditional search limitations by automatically extracting metadata filters from free-form text queries, reducing noise and enabling focused retrieval of relevant items. Experimental evaluation using the Amazon Toys Reviews dataset (10,000 unique items with 40,000+ reviews and detailed product attributes) demonstrated QAM's superior performance, achieving a mean average precision at 5 (mAP@5) of 52.99\%. This represents significant improvement over conventional methods, including BM25 keyword search, encoder-based semantic similarity search, cross-encoder re-ranking, and hybrid search combining BM25 and semantic results via Reciprocal Rank Fusion (RRF). The results establish QAM as a robust solution for Enterprise Search applications, particularly in e-commerce systems.

Ad hoc dataset search requires matching underspecified natural-language queries against sparse, heterogeneous metadata records, a task where typical lexical or dense retrieval alone falls short. We reposition dataset search as a software-architecture problem and propose a bounded, auditable reference architecture for agentic hybrid retrieval that combines BM25 lexical search with dense-embedding retrieval via reciprocal rank fusion (RRF), orchestrated by a large language model (LLM) agent that repeatedly plans queries, evaluates the sufficiency of results, and reranks candidates. To reduce the vocabulary mismatch between user intent and provider-authored metadata, we introduce an offline metadata augmentation step in which an LLM generates pseudo-queries for each dataset record, augmenting both retrieval indexes before query time. Two architectural styles are examined: a single ReAct agent and a multi-agent horizontal architecture with Feedback Control. Their quality-attribute tradeoffs are analyzed with respect to modifiability, observability, performance, and governance. An evaluation framework comprising seven system variants is defined to isolate the contribution of each architectural decision. The architecture is presented as an extensible reference design for the software architecture community, incorporating explicit governance tactics to bound and audit nondeterministic LLM components.

The rapid acceleration of scientific publishing has created substantial challenges for researchers attempting to discover, contextualize, and interpret relevant literature. Traditional keyword-based search systems provide limited semantic understanding, while existing AI-driven tools typically focus on isolated tasks such as retrieval, clustering, or bibliometric visualization. This paper presents an integrated system for scientific literature exploration that combines large-scale data acquisition, hybrid retrieval, semantic topic modeling, and heterogeneous knowledge graph construction. The system builds a comprehensive corpus by merging full-text data from arXiv with structured metadata from OpenAlex. A hybrid retrieval architecture fuses BM25 lexical search with embedding-based semantic search using Reciprocal Rank Fusion. Topic modeling is performed on retrieved results using BERTopic or non-negative matrix factorization depending on computational resources. A knowledge graph unifies papers, authors, institutions, countries, and extracted topics into an interpretable structure. The system provides a multi-layered exploration environment that reveals not only relevant publications but also the conceptual and relational landscape surrounding a query. Evaluation across multiple queries demonstrates improvements in retrieval relevance, topic coherence, and interpretability. The proposed framework contributes an extensible foundation for AI-assisted scientific discovery.

Why do we need another AI to help the AI? We argue you don't. Stateless LLM sessions impose re-orientation costs on iterative, session-heavy workflows. Prior work addresses cross-session memory through retrieval-augmented approaches: store history, embed it, retrieve by semantic similarity. Cross-session memory is a state management problem, not a search problem. Similarity search fails for named entity resolution within bounded vocabulary contexts because beliefs about a shared technical domain are semantically proximate by construction. A single user is the simplest bounded vocabulary context; engineering teams converge on the same property through shared codebases and terminology. We present Tenure, a local-first proxy that maintains a typed belief store with epistemic status, versioned supersession, and scope isolation, injecting curated context into every LLM session through precision-first retrieval. Hard scope isolation provides a structural guarantee: the right beliefs surface, and only within the boundaries the user has authorized. Tenure's typed schema converts extracted facts into imperative instructions via a why it matters field, making injected beliefs directly actionable rather than raw material for the model to re-derive. A controlled evaluation on 72 retrieval cases demonstrates the gap. Cosine similarity over dense embeddings achieves mean precision of 0.12. Alias-weighted BM25 maintains mean precision of 1.0, passing 72/72 cases versus 8/72 for cosine similarity on the same corpus. Hybrid retrieval typically solves vocabulary mismatch between disparate authors; Tenure eliminates this structurally: query and belief authors are the same person, and an alias enrichment flywheel continuously indexes their specific vocabulary. Under multi-turn topic drift this worsens: the vector backend produces drift scores of 0.43--0.50 on noise-critical turns where BM25 maintains 0.

NASA and its data centers hold thousands of geoscience datasets and tools like Worldview, Giovanni, the Science Discovery Engine, and Harmony. Finding the right one is hard even for domain experts. We present an agentic search system, deployed as a public service for the geoscience community, that takes a natural-language research query and returns the matching datasets and tools. We demonstrate that, in the era of large language models, the latent value of knowledge graphs (KGs) can be substantially amplified through agentic search. From the NASA Earth Observation Knowledge Graph (NASA EO-KG) we derive NASA-EO-Bench, an open benchmark of 47k query-dataset pairs (21k task-based queries). A neural scorer fine-tuned on NASA-EO-Bench beats cosine and BM25 baselines. Further combining it with BM25 via score fusion raises both Recall@10 (R@10) and MRR by over 5x. On top of this supervised pipeline, we add a zero-shot agentic reranking stage that, without any additional training, lifts MRR by 28% on a stratified N=200 subset, showing that LLM reasoning is complementary to supervised retrieval.

Does a lexical retriever suffice as large language models (LLMs) become more capable in an agentic loop? This question naturally arises when building deep research systems. We revisit it by pairing BM25 with frontier LLMs that have better reasoning and tool-use abilities. To support researchers asking the same question, we introduce Pi-Serini, a search agent equipped with three tools for retrieving, browsing, and reading documents. Our results show that, on BrowseComp-Plus, a well-configured lexical retriever with sufficient retrieval depth can support effective deep research when paired with more capable LLMs. Specifically, Pi-Serini with gpt-5.5 achieves 83.1% answer accuracy and 94.7% surfaced evidence recall, outperforming released search agents that use dense retrievers. Controlled ablations further show that BM25 tuning improves answer accuracy by 18.0% and surfaced evidence recall by 11.1% over the default BM25 setting, while increasing retrieval depth further improves surfaced evidence recall by 25.3% over the shallow-retrieval setting. Source code is available at https://github.com/justram/pi-serini.

Literature search questions, such as "where can I find research on the evaluation of consistency in generated summaries?" pose significant challenges for modern search engines and retrieval systems. These questions often require a deep understanding of research concepts and the ability to reason over entire articles. In this work, we introduce LitSearch, a retrieval benchmark comprising 597 realistic literature search queries about recent ML and NLP papers. LitSearch is constructed using a combination of (1) questions generated by GPT-4 based on paragraphs containing inline citations from research papers and (2) questions about recently published papers, manually written by their authors. All LitSearch questions were manually examined or edited by experts to ensure high quality. We extensively benchmark state-of-the-art retrieval models and also evaluate two LLM-based reranking pipelines. We find a significant performance gap between BM25 and state-of-the-art dense retrievers, with a 24.8% difference in absolute recall@5. The LLM-based reranking strategies further improve the best-performing dense retriever by 4.4%. Additionally, commercial search engines and research tools like Google Search perform poorly on LitSearch, lagging behind the best dense retriever by 32 points. Taken together, these results show that LitSearch is an informative new testbed for retrieval systems while catering to a real-world use case.

Retrieval-augmented generation (RAG) spans lexical and dense retrieval, graph-based indexing, and agentic search, but these paradigms are usually evaluated on different benchmarks at one corpus size, leaving their accuracy-cost scaling unclear. To bridge this gap, we present a controlled study that varies corpus size along 28 strictly nested tiers spanning roughly 450-fold, while holding questions and a fixed bedrock of relevant and adversarial documents unchanged. Under one reader model and one judging protocol, we measure official accuracy, construction and query tokens, and latency. The results reveal a scale-dependent crossover rather than an unconditional winner. File-System Agent leads at the smallest shared tiers, but its sequential exploration costs 39 times more query tokens at the bedrock and becomes less effective as the search space grows. Around 10 million corpus tokens, BM25 overtakes it and leads at every larger shared tier, with a margin approaching 20 points at full scale. BM25 also anchors the low-cost end of the Pareto frontier without LLM-based construction. Dense retrieval remains efficient but less accurate, whereas graph-based RAG encounters construction walls before deployment scale and its scalable variants remain below BM25 at shared tiers. Overall, corpus growth increasingly favors global candidate ranking: lexical retrieval is the strongest scalable default, while agentic reasoning works best after ranked discovery rather than in place of it.

We introduce BM25S, an efficient Python-based implementation of BM25 that only depends on Numpy and Scipy. BM25S achieves up to a 500x speedup compared to the most popular Python-based framework by eagerly computing BM25 scores during indexing and storing them into sparse matrices. It also achieves considerable speedups compared to highly optimized Java-based implementations, which are used by popular commercial products. Finally, BM25S reproduces the exact implementation of five BM25 variants based on Kamphuis et al. (2020) by extending eager scoring to non-sparse variants using a novel score shifting method. The code can be found at https://github.com/xhluca/bm25s

Retrieval for search agents is still inherited from non-agentic information retrieval: a retriever ranks the corpus and the agent reads a small set of returned documents. Recent direct corpus interaction (DCI) work shows that agents can instead interact with the raw corpus through shell tools such as grep and file reads. But unbounded interaction does not scale: every broad shell command is a scan over the whole corpus, and latency degrades sharply as the corpus grows. We argue that the role of retrieval for agentic search is not just to select documents that fit in the LLM context window, but to construct an interaction space: a bounded subset of the corpus the agent can explore with associated tools. Two design consequences follow. The space needs a boundary supplied by retrieval, and the objects within it should be processed for interaction. As a proof of concept, we propose RISE (Retrieving Interaction SpacE): we use BM25 to construct the interaction space; meanwhile, its documents are processed during indexing for shell-style navigation. On BrowseComp-Plus, RISE matches the pure-shell DCI baseline at 78% accuracy with gpt-5.4-mini at roughly one quarter of the per-query cost. At 1M documents, RISE-BM25 reaches 81% on gpt-5.4-mini, whereas DCI on gpt-5.4-nano degrades to 60% with 33 of 100 wall-clock failures.

Learned sparse retrieval, which can efficiently perform retrieval through mature inverted-index engines, has garnered growing attention in recent years. Particularly, the inference-free sparse retrievers are attractive as they eliminate online model inference in the retrieval phase thereby avoids huge computational cost, offering reasonable throughput and latency. However, even the state-of-the-art (SOTA) inference-free sparse models lag far behind in terms of search relevance when compared to both sparse and dense siamese models. Towards competitive search relevance for inference-free sparse retrievers, we argue that they deserve dedicated training methods other than using same ones with siamese encoders. In this paper, we propose two different approaches for performance improvement. First, we introduce the IDF-aware FLOPS loss, which introduces Inverted Document Frequency (IDF) to the sparsification of representations. We find that it mitigates the negative impact of the FLOPS regularization on search relevance, allowing the model to achieve a better balance between accuracy and efficiency. Moreover, we propose a heterogeneous ensemble knowledge distillation framework that combines siamese dense and sparse retrievers to generate supervisory signals during the pre-training phase. The ensemble framework of dense and sparse retriever capitalizes on their strengths respectively, providing a strong upper bound for knowledge distillation. To concur the diverse feedback from heterogeneous supervisors, we normalize and then aggregate the outputs of the teacher models to eliminate score scale differences. On the BEIR benchmark, our model outperforms existing SOTA inference-free sparse model by 3.3 NDCG@10 score. It exhibits search relevance comparable to siamese sparse retrievers and client-side latency only 1.1x that of BM25.

In this paper, we demonstrate that information retrieval can be accomplished with a single Transformer, in which all information about the corpus is encoded in the parameters of the model. To this end, we introduce the Differentiable Search Index (DSI), a new paradigm that learns a text-to-text model that maps string queries directly to relevant docids; in other words, a DSI model answers queries directly using only its parameters, dramatically simplifying the whole retrieval process. We study variations in how documents and their identifiers are represented, variations in training procedures, and the interplay between models and corpus sizes. Experiments demonstrate that given appropriate design choices, DSI significantly outperforms strong baselines such as dual encoder models. Moreover, DSI demonstrates strong generalization capabilities, outperforming a BM25 baseline in a zero-shot setup.

This paper presents first successful steps in designing search agents that learn meta-strategies for iterative query refinement in information-seeking tasks. Our approach uses machine reading to guide the selection of refinement terms from aggregated search results. Agents are then empowered with simple but effective search operators to exert fine-grained and transparent control over queries and search results. We develop a novel way of generating synthetic search sessions, which leverages the power of transformer-based language models through (self-)supervised learning. We also present a reinforcement learning agent with dynamically constrained actions that learns interactive search strategies from scratch. Our search agents obtain retrieval and answer quality performance comparable to recent neural methods, using only a traditional term-based BM25 ranking function and interpretable discrete reranking and filtering actions.

Code search is an important task that has seen many developments in recent years. However, previous attempts have mostly considered the problem of searching for code by a text query. We argue that using a code snippet (and possibly an associated traceback) as a query and looking for answers with bugfixing instructions and code samples is a natural use case that is not covered by existing approaches. Moreover, existing datasets use comments extracted from code rather than full-text descriptions as text, making them unsuitable for this use case. We present a new SearchBySnippet dataset implementing the search-by-code use case based on StackOverflow data; it turns out that in this setting, existing architectures fall short of the simplest BM25 baseline even after fine-tuning. We present a new single encoder model SnippeR that outperforms several strong baselines on the SearchBySnippet dataset with a result of 0.451 Recall@10; we propose the SearchBySnippet dataset and SnippeR as a new important benchmark for code search evaluation.

The expanding Lean 4 ecosystem poses challenges for navigating its vast libraries. This paper introduces LeanExplore, a search engine for Lean 4 declarations. LeanExplore enables users to semantically search for statements, both formally and informally, across select Lean 4 packages (including Batteries, Init, Lean, Mathlib, PhysLean, and Std). This search capability is powered by a hybrid ranking strategy, integrating scores from a multi-source semantic embedding model (capturing conceptual meaning from formal Lean code, docstrings, AI-generated informal translations, and declaration titles), BM25+ for keyword-based lexical relevance, and a PageRank-based score reflecting declaration importance and interconnectedness. The search engine is accessible via a dedicated website (https://www.leanexplore.com/) and a Python API (https://github.com/justincasher/lean-explore). Furthermore, the database can be downloaded, allowing users to self-host the service. LeanExplore integrates easily with LLMs via the model context protocol (MCP), enabling users to chat with an AI assistant about Lean declarations or utilize the search engine for building theorem-proving agents. This work details LeanExplore's architecture, data processing, functionalities, and its potential to enhance Lean 4 workflows and AI-driven mathematical research

Domain specific question answering is an evolving field that requires specialized solutions to address unique challenges. In this paper, we show that a hybrid approach combining a fine-tuned dense retriever with keyword based sparse search methods significantly enhances performance. Our system leverages a linear combination of relevance signals, including cosine similarity from dense retrieval, BM25 scores, and URL host matching, each with tunable boost parameters. Experimental results indicate that this hybrid method outperforms our single-retriever system, achieving improved accuracy while maintaining robust contextual grounding. These findings suggest that integrating multiple retrieval methodologies with weighted scoring effectively addresses the complexities of domain specific question answering in enterprise settings.

As large-scale visual-document corpora such as arXiv papers and enterprise PDFs continue to grow, visual-document retrieval has gained increasing attention; yet it still lacks a deployable system that lexically indexes visual documents to serve queries without neural encoding at scale. Existing methods either achieve strong retrieval quality with VLM-based dense or multi-vector models but require neural query encoding at serving time, or avoid query encoding with OCR- or caption-based BM25 at the cost of time-consuming text extraction or generation. To fill this missing serving regime, we present V-SPLADE, an inference-free sparse retriever for visual-document retrieval. However, such inference-free multimodal learned sparse retrieval systems remain underexplored and have not yet shown dense-level effectiveness under high sparsity. We attribute this limitation to a lexical grounding problem: visual sparse representations often fail to capture the lexical content embedded in document images. To address this problem, we introduce caption-gated token supervision, a training-only signal that uses VLM-generated captions as lexical cues to activate retrieval-relevant vocabulary dimensions. With this supervision, V-SPLADE improves average NDCG@5 across six visual-document retrieval benchmarks by +13.8pp over the same-scale dense baseline and by up to +6.3pp over OCR- or caption-based BM25 baselines. On an 18.7M-document corpus, it more than doubles R@5 over the same-scale dense baseline and further improves competing retrievers through score fusion by up to +2.4pp R@5. Code will be released soon at https://github.com/naver/v-splade.

Agentic search over large corpora relies on retriever-mediated interfaces (e.g., BM25 or ColBERT) for scalable candidate discovery. While effective at ranking relevant documents, these interfaces expose evidence only as ranked results or bounded document views, limiting agents' ability to reorganize material and verify constraints across documents. Direct Corpus Interaction (DCI) addresses this limitation by exposing shell-executable corpus operations for flexible search, filtering, comparison, and verification. However, full-corpus terminal commands become slow and unstable as the corpus grows, degrading performance and efficiency. We introduce DR-DCI, a retriever-steered DCI framework that treats retrieval as an agent-callable action for expanding a local workspace. Rather than operating directly over the full corpus, the agent dynamically pulls relevant documents into an evolving workspace and conducts DCI operations within it. This design combines retriever-level recall with DCI-style precision: retrieval keeps exploration scalable, while DCI preserves the local operations needed for effective evidence resolution. Experiments show that DR-DCI is both effective and efficient across scales. On Browsecomp-Plus, DR-DCI reaches 71.2\% accuracy, improving over raw DCI and ablated variants by up to 8.3 points while reducing tool usage, wall time, and estimated cost. With workspace-preserving context reset, accuracy further improves to 73.3\%. In corpus-scaling experiments, DR-DCI remains effective from 100K to 10M documents, whereas raw DCI becomes unstable and BM25 performs substantially worse. DR-DCI also scales to a 20M-scale file-per-document Wiki-18 QA setting, achieving an average score of 63.0 across six benchmarks and outperforming retrieval-based and trained search-agent baselines. Ablation analysis further shows that ranked previews and inter-document DCI are key to performance.

Long conversations with an AI agent create a simple problem for one user: the history is useful, but carrying it verbatim is expensive. We study personalized agent memory: one user's conversation history with an agent, distilled into a compact retrieval layer for later search. Each exchange is compressed into a compound object with four fields (exchange_core, specific_context, thematic room_assignments, and regex-extracted files_touched). The searchable distilled text averages 38 tokens per exchange. Applied to 4,182 conversations (14,340 exchanges) from 6 software engineering projects, the method reduces average exchange length from 371 to 38 tokens, yielding 11x compression. We evaluate whether personalized recall survives that compression using 201 recall-oriented queries, 107 configurations spanning 5 pure and 5 cross-layer search modes, and 5 LLM graders (214,519 consensus-graded query-result pairs). The best pure distilled configuration reaches 96% of the best verbatim MRR (0.717 vs 0.745). Results are mechanism-dependent. All 20 vector search configurations remain non-significant after Bonferroni correction, while all 20 BM25 configurations degrade significantly (effect sizes |d|=0.031-0.756). The best cross-layer setup slightly exceeds the best pure verbatim baseline (MRR 0.759). Structured distillation compresses single-user agent memory without uniformly sacrificing retrieval quality. At 1/11 the context cost, thousands of exchanges fit within a single prompt while the verbatim source remains available for drill-down. We release the implementation and analysis pipeline as open-source software.

Classical information retrieval systems such as BM25 rely on exact lexical match and carry out search efficiently with inverted list index. Recent neural IR models shifts towards soft semantic matching all query document terms, but they lose the computation efficiency of exact match systems. This paper presents COIL, a contextualized exact match retrieval architecture that brings semantic lexical matching. COIL scoring is based on overlapping query document tokens' contextualized representations. The new architecture stores contextualized token representations in inverted lists, bringing together the efficiency of exact match and the representation power of deep language models. Our experimental results show COIL outperforms classical lexical retrievers and state-of-the-art deep LM retrievers with similar or smaller latency.

This paper presents EasyRAG, a simple, lightweight, and efficient retrieval-augmented generation framework for automated network operations. Our framework has three advantages. The first is accurate question answering. We designed a straightforward RAG scheme based on (1) a specific data processing workflow (2) dual-route sparse retrieval for coarse ranking (3) LLM Reranker for reranking (4) LLM answer generation and optimization. This approach achieved first place in the GLM4 track in the preliminary round and second place in the GLM4 track in the semifinals. The second is simple deployment. Our method primarily consists of BM25 retrieval and BGE-reranker reranking, requiring no fine-tuning of any models, occupying minimal VRAM, easy to deploy, and highly scalable; we provide a flexible code library with various search and generation strategies, facilitating custom process implementation. The last one is efficient inference. We designed an efficient inference acceleration scheme for the entire coarse ranking, reranking, and generation process that significantly reduces the inference latency of RAG while maintaining a good level of accuracy; each acceleration scheme can be plug-and-play into any component of the RAG process, consistently enhancing the efficiency of the RAG system. Our code and data are released at https://github.com/BUAADreamer/EasyRAG.

Finding truly analogous precedents requires capturing legal reasoning beyond surface word overlap. We present a two-stage, section-aware framework for legal case retrieval that first segments raw judgments into facts, issues, decision, and reasoning using a deterministic large language model (LLM) offline. In Stage 1, we combine parallel lexical (BM25) and semantic (dense ANN) whole-document searches via Reciprocal Rank Fusion (RRF) to form a high-recall candidate pool. In Stage 2, we perform fine-grained, like-for-like comparisons (e.g., query reasoning vs. candidate reasoning). To address the scale mismatch between unbounded lexical scores and cosine similarities, we apply query-wise Z-score normalization before aggregating signals with learned section weights. For the top results, the system returns the relevant section text with a concise, grounded rationale and party-stance labels. We evaluate on a jurisdiction-scale benchmark, demonstrating consistent gains over strong lexical and neural baselines while maintaining high candidate coverage

Deep-Research agents, which integrate large language models (LLMs) with search tools, have shown success in improving the effectiveness of handling complex queries that require iterative search planning and reasoning over search results. Evaluations on current benchmarks like BrowseComp relies on black-box live web search APIs, have notable limitations in (1) fairness: dynamic and opaque web APIs hinder fair comparisons and reproducibility of deep research methods; (2) transparency: lack of control over the document corpus makes it difficult to isolate retriever contributions. In other words, the current evaluations may compare a complete deep research system at a given time, but they do not foster well-controlled experiments to provide insights into the capability of underlying deep research LLMs. To address these challenges, we introduce BrowseComp-Plus, a benchmark derived from BrowseComp, employing a fixed, carefully curated corpus. Each query in BrowseComp-Plus includes human-verified supporting documents and mined challenging negatives, enabling controlled experimentation. The benchmark is shown to be effective in distinguishing the performance of deep research systems. For instance, the open-source model Search-R1, when paired with the BM25 retriever, achieves 3.86% accuracy, whereas the GPT-5 achieves 55.9%. Integrating the GPT-5 with the Qwen3-Embedding-8B retriever further enhances its accuracy to 70.1% with fewer search calls. This benchmark allows comprehensive evaluation and disentangled analysis of deep research agents and retrieval methods, fostering insights into retrieval effectiveness, citation accuracy, and context engineering in Deep-Research system.

Deep research agents have emerged as powerful systems for addressing complex queries. Meanwhile, LLM-based retrievers have demonstrated strong capability in following instructions or reasoning. This raises a critical question: can LLM-based retrievers effectively contribute to deep research agent workflows? To investigate this, we introduce SAGE, a benchmark for scientific literature retrieval comprising 1,200 queries across four scientific domains, with a 200,000 paper retrieval corpus.We evaluate six deep research agents and find that all systems struggle with reasoning-intensive retrieval. Using DR Tulu as backbone, we further compare BM25 and LLM-based retrievers (i.e., ReasonIR and gte-Qwen2-7B-instruct) as alternative search tools. Surprisingly, BM25 significantly outperforms LLM-based retrievers by approximately 30%, as existing agents generate keyword-oriented sub-queries. To improve performance, we propose a corpus-level test-time scaling framework that uses LLMs to augment documents with metadata and keywords, making retrieval easier for off-the-shelf retrievers. This yields 8% and 2% gains on short-form and open-ended questions, respectively.

AI systems have achieved remarkable success in processing text and relational data, yet visual document processing remains relatively underexplored. Whereas traditional systems require OCR transcriptions to convert these visual documents into text and metadata, recent advances in multimodal foundation models offer retrieval and generation directly from document images. This raises a key question: How do image-based systems compare to established text-based methods? We introduce IRPAPERS, a benchmark of 3,230 pages from 166 scientific papers, with both an image and an OCR transcription for each page. Using 180 needle-in-the-haystack questions, we compare image- and text-based retrieval and question answering systems. Text retrieval using Arctic 2.0 embeddings, BM25, and hybrid text search achieved 46% Recall@1, 78% Recall@5, and 91% Recall@20, while image-based retrieval reaches 43%, 78%, and 93%, respectively. The two modalities exhibit complementary failures, enabling multimodal hybrid search to outperform either alone, achieving 49% Recall@1, 81% Recall@5, and 95% Recall@20. We further evaluate efficiency-performance tradeoffs with MUVERA and assess multiple multi-vector image embedding models. Among closed-source models, Cohere Embed v4 page image embeddings outperform Voyage 3 Large text embeddings and all tested open-source models, achieving 58% Recall@1, 87% Recall@5, and 97% Recall@20. For question answering, text-based RAG systems achieved higher ground-truth alignment than image-based systems (0.82 vs. 0.71), and both benefit substantially from increased retrieval depth, with multi-document retrieval outperforming oracle single-document retrieval. We analyze the complementary limitations of unimodal text and image representations and identify question types that require one modality over the other. The IRPAPERS dataset and all experimental code are publicly available.

This paper addresses automatic geospatial question answering over multilingual toponymic data. An original bilingual dataset of toponyms of the Republic of Tatarstan is introduced, comprising 9,688 structured records with linguistic, etymological, administrative, and coordinate information (93.1% georeferenced). Based on this dataset, a question-answering corpus of approximately 39,000 question-context-answer triples is constructed with guaranteed answer localization. A hybrid retriever integrates dense semantic indexing (multilingual-e5-large) with geospatial filtering via KD-trees and haversine distance. On 500 test queries, the hybrid search achieves Recall@1=0.988, Recall@5=1.000, and MRR=0.994, significantly outperforming BM25 and purely spatial methods. Among tested reader architectures (RuBERT, XLM-RoBERTa-large, T5-RUS), XLM-RoBERTa-large attains the best quality: EM=0.992, F1=0.994. On raw outputs, RuBERT models fail on coordinate questions (F1=0) while XLM-RoBERTa-large reaches F1=0.984; however, simple post-processing eliminates numerical gaps and restores RuBERT accuracy to 100%. This discrepancy stems from tokenization differences and pre-training corpora composition. All resources (dataset, QA corpus, model weights, web demo) are openly published on Hugging Face. Results apply to geospatial QA services, geocoding, and digital humanities in multilingual regions.

The ever-increasing size of language models curtails their widespread access to the community, thereby galvanizing many companies and startups into offering access to large language models through APIs. One particular API, suitable for dense retrieval, is the semantic embedding API that builds vector representations of a given text. With a growing number of APIs at our disposal, in this paper, our goal is to analyze semantic embedding APIs in realistic retrieval scenarios in order to assist practitioners and researchers in finding suitable services according to their needs. Specifically, we wish to investigate the capabilities of existing APIs on domain generalization and multilingual retrieval. For this purpose, we evaluate the embedding APIs on two standard benchmarks, BEIR, and MIRACL. We find that re-ranking BM25 results using the APIs is a budget-friendly approach and is most effective on English, in contrast to the standard practice, i.e., employing them as first-stage retrievers. For non-English retrieval, re-ranking still improves the results, but a hybrid model with BM25 works best albeit at a higher cost. We hope our work lays the groundwork for thoroughly evaluating APIs that are critical in search and more broadly, in information retrieval.

Biomedical question-answering (QA) systems require effective retrieval and generation components to ensure accuracy, efficiency, and scalability. This study systematically examines a Retrieval-Augmented Generation (RAG) system for biomedical QA, evaluating retrieval strategies and response time trade-offs. We first assess state-of-the-art retrieval methods, including BM25, BioBERT, MedCPT, and a hybrid approach, alongside common data stores such as Elasticsearch, MongoDB, and FAISS, on a ~10% subset of PubMed (2.4M documents) to measure indexing efficiency, retrieval latency, and retriever performance in the end-to-end RAG system. Based on these insights, we deploy the final RAG system on the full 24M PubMed corpus, comparing different retrievers' impact on overall performance. Evaluations of the retrieval depth show that retrieving 50 documents with BM25 before reranking with MedCPT optimally balances accuracy (0.90), recall (0.90), and response time (1.91s). BM25 retrieval time remains stable (82ms), while MedCPT incurs the main computational cost. These results highlight previously not well-known trade-offs in retrieval depth, efficiency, and scalability for biomedical QA. With open-source code, the system is fully reproducible and extensible.

Many recent approaches towards neural information retrieval mitigate their computational costs by using a multi-stage ranking pipeline. In the first stage, a number of potentially relevant candidates are retrieved using an efficient retrieval model such as BM25. Although BM25 has proven decent performance as a first-stage ranker, it tends to miss relevant passages. In this context we propose CoRT, a simple neural first-stage ranking model that leverages contextual representations from pretrained language models such as BERT to complement term-based ranking functions while causing no significant delay at query time. Using the MS MARCO dataset, we show that CoRT significantly increases the candidate recall by complementing BM25 with missing candidates. Consequently, we find subsequent re-rankers achieve superior results with less candidates. We further demonstrate that passage retrieval using CoRT can be realized with surprisingly low latencies.

Zero-shot evaluation of information retrieval (IR) models is often performed using BEIR; a large and heterogeneous benchmark composed of multiple datasets, covering different retrieval tasks across various domains. Although BEIR has become a standard benchmark for the zero-shot setup, its exclusively English content reduces its utility for underrepresented languages in IR, including Dutch. To address this limitation and encourage the development of Dutch IR models, we introduce BEIR-NL by automatically translating the publicly accessible BEIR datasets into Dutch. Using BEIR-NL, we evaluated a wide range of multilingual dense ranking and reranking models, as well as the lexical BM25 method. Our experiments show that BM25 remains a competitive baseline, and is only outperformed by the larger dense models trained for retrieval. When combined with reranking models, BM25 achieves performance on par with the best dense ranking models. In addition, we explored the impact of translation on the data by back-translating a selection of datasets to English, and observed a performance drop for both dense and lexical methods, indicating the limitations of translation for creating benchmarks. BEIR-NL is publicly available on the Hugging Face hub.

We describe our single submission to task 1 of COLIEE 2021. Our vanilla BM25 got second place, well above the median of submissions. Code is available at https://github.com/neuralmind-ai/coliee.

The BEIR dataset is a large, heterogeneous benchmark for Information Retrieval (IR) in zero-shot settings, garnering considerable attention within the research community. However, BEIR and analogous datasets are predominantly restricted to the English language. Our objective is to establish extensive large-scale resources for IR in the Polish language, thereby advancing the research in this NLP area. In this work, inspired by mMARCO and Mr.~TyDi datasets, we translated all accessible open IR datasets into Polish, and we introduced the BEIR-PL benchmark -- a new benchmark which comprises 13 datasets, facilitating further development, training and evaluation of modern Polish language models for IR tasks. We executed an evaluation and comparison of numerous IR models on the newly introduced BEIR-PL benchmark. Furthermore, we publish pre-trained open IR models for Polish language,d marking a pioneering development in this field. Additionally, the evaluation revealed that BM25 achieved significantly lower scores for Polish than for English, which can be attributed to high inflection and intricate morphological structure of the Polish language. Finally, we trained various re-ranking models to enhance the BM25 retrieval, and we compared their performance to identify their unique characteristic features. To ensure accurate model comparisons, it is necessary to scrutinise individual results rather than to average across the entire benchmark. Thus, we thoroughly analysed the outcomes of IR models in relation to each individual data subset encompassed by the BEIR benchmark. The benchmark data is available at URL {\bf https://huggingface.co/clarin-knext}.

Retrieval-augmented generation (RAG) is a common way to ground language models in external documents and up-to-date information. Classical retrieval systems relied on lexical methods such as BM25, which rank documents by term overlap with corpus-level weighting. End-to-end multimodal retrievers trained on large query-document datasets claim substantial improvements over these approaches, especially for multilingual documents with complex visual layouts. We demonstrate that better document representation is the primary driver of benchmark improvements. By systematically varying transcription and preprocessing methods while holding the retrieval mechanism fixed, we demonstrate that BM25 can recover large gaps on multilingual and visual benchmarks. Our findings call for decomposed evaluation benchmarks that separately measure transcription and retrieval capabilities, enabling the field to correctly attribute progress and focus effort where it matters.

In this paper we propose a novel approach for combining first-stage lexical retrieval models and Transformer-based re-rankers: we inject the relevance score of the lexical model as a token in the middle of the input of the cross-encoder re-ranker. It was shown in prior work that interpolation between the relevance score of lexical and BERT-based re-rankers may not consistently result in higher effectiveness. Our idea is motivated by the finding that BERT models can capture numeric information. We compare several representations of the BM25 score and inject them as text in the input of four different cross-encoders. We additionally analyze the effect for different query types, and investigate the effectiveness of our method for capturing exact matching relevance. Evaluation on the MSMARCO Passage collection and the TREC DL collections shows that the proposed method significantly improves over all cross-encoder re-rankers as well as the common interpolation methods. We show that the improvement is consistent for all query types. We also find an improvement in exact matching capabilities over both BM25 and the cross-encoders. Our findings indicate that cross-encoder re-rankers can efficiently be improved without additional computational burden and extra steps in the pipeline by explicitly adding the output of the first-stage ranker to the model input, and this effect is robust for different models and query types.

This paper presents E5, a family of state-of-the-art text embeddings that transfer well to a wide range of tasks. The model is trained in a contrastive manner with weak supervision signals from our curated large-scale text pair dataset (called CCPairs). E5 can be readily used as a general-purpose embedding model for any tasks requiring a single-vector representation of texts such as retrieval, clustering, and classification, achieving strong performance in both zero-shot and fine-tuned settings. We conduct extensive evaluations on 56 datasets from the BEIR and MTEB benchmarks. For zero-shot settings, E5 is the first model that outperforms the strong BM25 baseline on the BEIR retrieval benchmark without using any labeled data. When fine-tuned, E5 obtains the best results on the MTEB benchmark, beating existing embedding models with 40x more parameters.

Even though term-based methods such as BM25 provide strong baselines in ranking, under certain conditions they are dominated by large pre-trained masked language models (MLMs) such as BERT. To date, the source of their effectiveness remains unclear. Is it their ability to truly understand the meaning through modeling syntactic aspects? We answer this by manipulating the input order and position information in a way that destroys the natural sequence order of query and passage and shows that the model still achieves comparable performance. Overall, our results highlight that syntactic aspects do not play a critical role in the effectiveness of re-ranking with BERT. We point to other mechanisms such as query-passage cross-attention and richer embeddings that capture word meanings based on aggregated context regardless of the word order for being the main attributions for its superior performance.

Multimodal magnetic resonance imaging (MRI) constitutes the first line of investigation for clinicians in the care of brain tumors, providing crucial insights for surgery planning, treatment monitoring, and biomarker identification. Pre-training on large datasets have been shown to help models learn transferable representations and adapt with minimal labeled data. This behavior is especially valuable in medical imaging, where annotations are often scarce. However, applying this paradigm to multimodal medical data introduces a challenge: most existing approaches assume that all imaging modalities are available during both pre-training and fine-tuning. In practice, missing modalities often occur due to acquisition issues, specialist unavailability, or specific experimental designs on small in-house datasets. Consequently, a common approach involves training a separate model for each desired modality combination, making the process both resource-intensive and impractical for clinical use. Therefore, we introduce BM-MAE, a masked image modeling pre-training strategy tailored for multimodal MRI data. The same pre-trained model seamlessly adapts to any combination of available modalities, extracting rich representations that capture both intra- and inter-modal information. This allows fine-tuning on any subset of modalities without requiring architectural changes, while still benefiting from a model pre-trained on the full set of modalities. Extensive experiments show that the proposed pre-training strategy outperforms or remains competitive with baselines that require separate pre-training for each modality subset, while substantially surpassing training from scratch on several downstream tasks. Additionally, it can quickly and efficiently reconstruct missing modalities, highlighting its practical value. Code and trained models are available at: https://github.com/Lucas-rbnt/BM-MAE

Statutory article retrieval plays a crucial role in making legal information more accessible to both laypeople and legal professionals. Multilingual countries like Belgium present unique challenges for retrieval models due to the need for handling legal issues in multiple languages. Building on the Belgian Statutory Article Retrieval Dataset (BSARD) in French, we introduce the bilingual version of this dataset, bBSARD. The dataset contains parallel Belgian statutory articles in both French and Dutch, along with legal questions from BSARD and their Dutch translation. Using bBSARD, we conduct extensive benchmarking of retrieval models available for Dutch and French. Our benchmarking setup includes lexical models, zero-shot dense models, and fine-tuned small foundation models. Our experiments show that BM25 remains a competitive baseline compared to many zero-shot dense models in both languages. We also observe that while proprietary models outperform open alternatives in the zero-shot setting, they can be matched or surpassed by fine-tuning small language-specific models. Our dataset and evaluation code are publicly available.

We present **vstash**, a local-first document memory system that combines vector similarity search with full-text keyword matching via Reciprocal Rank Fusion (RRF) and adaptive per-query IDF weighting. All data resides in a single SQLite file using sqlite-vec for approximate nearest neighbor search and FTS5 for keyword matching. We make four primary contributions. **(1)** Self-supervised embedding refinement via hybrid retrieval disagreement: across 753 BEIR queries on SciFact, NFCorpus, and FiQA, 74.5% produce top-10 disagreement between vector-heavy (vec=0.95, fts=0.05) and FTS-heavy (vec=0.05, fts=0.95) search (per-dataset rates 63.4% / 73.4% / 86.7%, Section 5.2), providing a free training signal without human labels. Fine-tuning BGE-small (33M params) with MultipleNegativesRankingLoss on 76K disagreement triples improves NDCG@10 on all 5 BEIR datasets (up to +19.5% on NFCorpus vs. BGE-small base RRF, Table 6). On 3 of 5 datasets, under different preprocessing, the tuned 33M-parameter pipeline matches or exceeds published ColBERTv2 results (110M params) and an untrained BGE-base (110M); on FiQA and ArguAna it underperforms ColBERTv2 (Section 5.5). **(2)** Adaptive RRF with per-query IDF weighting improves NDCG@10 on all 5 BEIR datasets versus fixed weights (up to +21.4% on ArguAna), achieving 0.7263 on SciFact with BGE-small. **(3)** A negative result on post-RRF scoring: frequency+decay, history-augmented recall, and cross-encoder reranking all failed to improve NDCG. **(4)** A production-grade substrate with integrity checking, schema versioning, ranking diagnostics, and a distance-based relevance signal validated on 50,425 relevance-judged queries across the 5 BEIR datasets. Search latency remains 20.9 ms median at 50K chunks with stable NDCG. The fine-tuned model is published as `Stffens/bge-small-rrf-v2` on HuggingFace. All code, data, and experiments are open-source.

Recently, InPars introduced a method to efficiently use large language models (LLMs) in information retrieval tasks: via few-shot examples, an LLM is induced to generate relevant queries for documents. These synthetic query-document pairs can then be used to train a retriever. However, InPars and, more recently, Promptagator, rely on proprietary LLMs such as GPT-3 and FLAN to generate such datasets. In this work we introduce InPars-v2, a dataset generator that uses open-source LLMs and existing powerful rerankers to select synthetic query-document pairs for training. A simple BM25 retrieval pipeline followed by a monoT5 reranker finetuned on InPars-v2 data achieves new state-of-the-art results on the BEIR benchmark. To allow researchers to further improve our method, we open source the code, synthetic data, and finetuned models: https://github.com/zetaalphavector/inPars/tree/master/tpu

The task of Prior Case Retrieval (PCR) in the legal domain is about automatically citing relevant (based on facts and precedence) prior legal cases in a given query case. To further promote research in PCR, in this paper, we propose a new large benchmark (in English) for the PCR task: IL-PCR (Indian Legal Prior Case Retrieval) corpus. Given the complex nature of case relevance and the long size of legal documents, BM25 remains a strong baseline for ranking the cited prior documents. In this work, we explore the role of events in legal case retrieval and propose an unsupervised retrieval method-based pipeline U-CREAT (Unsupervised Case Retrieval using Events Extraction). We find that the proposed unsupervised retrieval method significantly increases performance compared to BM25 and makes retrieval faster by a considerable margin, making it applicable to real-time case retrieval systems. Our proposed system is generic, we show that it generalizes across two different legal systems (Indian and Canadian), and it shows state-of-the-art performance on the benchmarks for both the legal systems (IL-PCR and COLIEE corpora).

Electronic Health Record (EHR) retrieval plays a pivotal role in various clinical tasks, but its development has been severely impeded by the lack of publicly available benchmarks. In this paper, we introduce a novel public EHR retrieval benchmark, CliniQ, to address this gap. We consider two retrieval settings: Single-Patient Retrieval and Multi-Patient Retrieval, reflecting various real-world scenarios. Single-Patient Retrieval focuses on finding relevant parts within a patient note, while Multi-Patient Retrieval involves retrieving EHRs from multiple patients. We build our benchmark upon 1,000 discharge summary notes along with the ICD codes and prescription labels from MIMIC-III, and collect 1,246 unique queries with 77,206 relevance judgments by further leveraging powerful LLMs as annotators. Additionally, we include a novel assessment of the semantic gap issue in EHR retrieval by categorizing matching types into string match and four types of semantic matches. On our proposed benchmark, we conduct a comprehensive evaluation of various retrieval methods, ranging from conventional exact match to popular dense retrievers. Our experiments find that BM25 sets a strong baseline and performs competitively to the dense retrievers, and general domain dense retrievers surprisingly outperform those designed for the medical domain. In-depth analyses on various matching types reveal the strengths and drawbacks of different methods, enlightening the potential for targeted improvement. We believe that our benchmark will stimulate the research communities to advance EHR retrieval systems.

Machine learning (ML) models hold the promise of transforming atomic simulations by delivering quantum chemical accuracy at a fraction of the computational cost. Realization of this potential would enable high-throughout, high-accuracy molecular screening campaigns to explore vast regions of chemical space and facilitate ab initio simulations at sizes and time scales that were previously inaccessible. However, a fundamental challenge to creating ML models that perform well across molecular chemistry is the lack of comprehensive data for training. Despite substantial efforts in data generation, no large-scale molecular dataset exists that combines broad chemical diversity with a high level of accuracy. To address this gap, Meta FAIR introduces Open Molecules 2025 (OMol25), a large-scale dataset composed of more than 100 million density functional theory (DFT) calculations at the omegaB97M-V/def2-TZVPD level of theory, representing billions of CPU core-hours of compute. OMol25 uniquely blends elemental, chemical, and structural diversity including: 83 elements, a wide-range of intra- and intermolecular interactions, explicit solvation, variable charge/spin, conformers, and reactive structures. There are ~83M unique molecular systems in OMol25 covering small molecules, biomolecules, metal complexes, and electrolytes, including structures obtained from existing datasets. OMol25 also greatly expands on the size of systems typically included in DFT datasets, with systems of up to 350 atoms. In addition to the public release of the data, we provide baseline models and a comprehensive set of model evaluations to encourage community engagement in developing the next-generation ML models for molecular chemistry.

We present Mr. TyDi, a multi-lingual benchmark dataset for mono-lingual retrieval in eleven typologically diverse languages, designed to evaluate ranking with learned dense representations. The goal of this resource is to spur research in dense retrieval techniques in non-English languages, motivated by recent observations that existing techniques for representation learning perform poorly when applied to out-of-distribution data. As a starting point, we provide zero-shot baselines for this new dataset based on a multi-lingual adaptation of DPR that we call "mDPR". Experiments show that although the effectiveness of mDPR is much lower than BM25, dense representations nevertheless appear to provide valuable relevance signals, improving BM25 results in sparse-dense hybrids. In addition to analyses of our results, we also discuss future challenges and present a research agenda in multi-lingual dense retrieval. Mr. TyDi can be downloaded at https://github.com/castorini/mr.tydi.

In this paper, we introduce BMMR, a large-scale bilingual, multimodal, multi-disciplinary reasoning dataset for the community to develop and evaluate large multimodal models (LMMs). BMMR comprises 110k college-level questions spanning 300 UNESCO-defined subjects, spanning diverse formats-multiple-choice, fill-in-the-blank, and open-ended QA-and sourced from both print and digital media such as books, exams, and quizzes. All data are curated and filtered via a human-in-the-loop and scalable framework, and each instance is paired with a high-quality reasoning path. The dataset is organized into two parts: BMMR-Eval that comprises 20,458 high-quality instances to comprehensively assess LMMs' knowledge and reasoning across multiple disciplines in both Chinese and English; and BMMR-Train that contains 88,991 instances to support further research and development, extending the current focus on mathematical reasoning to diverse disciplines and domains. In addition, we propose the process-based multi-discipline verifier (i.e., BMMR-Verifier) for accurate and fine-grained evaluation of reasoning paths. Extensive experiments on 24 models reveal that (i) even SOTA models (e.g., o3 and Gemini-2.5-Pro) leave substantial headroom on BMMR-Eval; (ii) reasoning models exhibit discipline bias and outperform LMMs only on specific subjects; (iii) open-source models still trail their proprietary counterparts; and (iv) fine-tuning on BMMR-Train narrows this gap. Additionally, we conduct reasoning-chain analyses using BMMR-Verifier and other in-depth studies, uncovering the challenges LMMs currently face in multidisciplinary reasoning. We will release the data, and we hope our work can offer insights and contributions to the community.

We carried out a reproducibility study of InPars recipe for unsupervised training of neural rankers. As a by-product of this study, we developed a simple-yet-effective modification of InPars, which we called InPars-light. Unlike InPars, InPars-light uses only a freely available language model BLOOM and 7x-100x smaller ranking models. On all five English retrieval collections (used in the original InPars study) we obtained substantial (7-30%) and statistically significant improvements over BM25 in nDCG or MRR using only a 30M parameter six-layer MiniLM ranker. In contrast, in the InPars study only a 100x larger MonoT5-3B model consistently outperformed BM25, whereas their smaller MonoT5-220M model (which is still 7x larger than our MiniLM ranker), outperformed BM25 only on MS MARCO and TREC DL 2020. In a purely unsupervised setting, our 435M parameter DeBERTA v3 ranker was roughly at par with the 7x larger MonoT5-3B: In fact, on three out of five datasets, it slightly outperformed MonoT5-3B. Finally, these good results were achieved by re-ranking only 100 candidate documents compared to 1000 used in InPars. We believe that InPars-light is the first truly cost-effective prompt-based unsupervised recipe to train and deploy neural ranking models that outperform BM25.

Large Language Models (LLMs) have demonstrated significant strides across various information retrieval tasks, particularly as rerankers, owing to their strong generalization and knowledge-transfer capabilities acquired from extensive pretraining. In parallel, the rise of LLM-based chat interfaces has raised user expectations, encouraging users to pose more complex queries that necessitate retrieval by ``reasoning'' over documents rather than through simple keyword matching or semantic similarity. While some recent efforts have exploited reasoning abilities of LLMs for reranking such queries, considerable potential for improvement remains. In that regards, we introduce InsertRank, an LLM-based reranker that leverages lexical signals like BM25 scores during reranking to further improve retrieval performance. InsertRank demonstrates improved retrieval effectiveness on -- BRIGHT, a reasoning benchmark spanning 12 diverse domains, and R2MED, a specialized medical reasoning retrieval benchmark spanning 8 different tasks. We conduct an exhaustive evaluation and several ablation studies and demonstrate that InsertRank consistently improves retrieval effectiveness across multiple families of LLMs, including GPT, Gemini, and Deepseek models. %In addition, we also conduct ablation studies on normalization by varying the scale of the BM25 scores, and positional bias by shuffling the order of the documents. With Deepseek-R1, InsertRank achieves a score of 37.5 on the BRIGHT benchmark. and 51.1 on the R2MED benchmark, surpassing previous methods.

Model merging aims to combine multiple task-specific expert models into a single model without joint retraining, offering a practical alternative to multi-task learning when data access or computational budget is limited. Existing methods, however, face two key limitations: (1) they overlook the valuable inductive bias of strong anchor models and estimate the merged weights from scratch, and (2) they rely on a shared hyperparameter setting across different modules of the network, lacking a global optimization strategy. This paper introduces Bayesian Model Merging (BMM), a plug-and-play bi-level optimization framework, where the inner level formulates the model merging as an activation-based Bayesian regression under a strong prior induced by an anchor model, yielding an efficient closed-form solution; and the outer level leverages a Bayesian optimization procedure to search module-specific hyperparameters globally based on a small validation set. Furthermore, we reveal a key alignment between activation statistics and task vectors, enabling us to derive a data-free variant of BMM that estimates the Gram matrix for regression without any auxiliary data. Across extensive benchmarks, including up to 20-task merging in vision and 5-task merging in language, BMM consistently outperforms all plug-and-play anchor baselines (e.g., TA, WUDI-Merging, and TSV). In particular, on the ViT-L/14 benchmark for 8-task merging, a single merged model reaches 95.1, closely matching the average performance of eight task-specific experts (95.8).

Existing neural information retrieval (IR) models have often been studied in homogeneous and narrow settings, which has considerably limited insights into their out-of-distribution (OOD) generalization capabilities. To address this, and to facilitate researchers to broadly evaluate the effectiveness of their models, we introduce Benchmarking-IR (BEIR), a robust and heterogeneous evaluation benchmark for information retrieval. We leverage a careful selection of 18 publicly available datasets from diverse text retrieval tasks and domains and evaluate 10 state-of-the-art retrieval systems including lexical, sparse, dense, late-interaction and re-ranking architectures on the BEIR benchmark. Our results show BM25 is a robust baseline and re-ranking and late-interaction-based models on average achieve the best zero-shot performances, however, at high computational costs. In contrast, dense and sparse-retrieval models are computationally more efficient but often underperform other approaches, highlighting the considerable room for improvement in their generalization capabilities. We hope this framework allows us to better evaluate and understand existing retrieval systems, and contributes to accelerating progress towards better robust and generalizable systems in the future. BEIR is publicly available at https://github.com/UKPLab/beir.

Neural passage retrieval is a new and promising approach in open retrieval question answering. In this work, we stress-test the Dense Passage Retriever (DPR) -- a state-of-the-art (SOTA) open domain neural retrieval model -- on closed and specialized target domains such as COVID-19, and find that it lags behind standard BM25 in this important real-world setting. To make DPR more robust under domain shift, we explore its fine-tuning with synthetic training examples, which we generate from unlabeled target domain text using a text-to-text generator. In our experiments, this noisy but fully automated target domain supervision gives DPR a sizable advantage over BM25 in out-of-domain settings, making it a more viable model in practice. Finally, an ensemble of BM25 and our improved DPR model yields the best results, further pushing the SOTA for open retrieval QA on multiple out-of-domain test sets.

Tree-search decoding is an effective form of test-time scaling for large language models (LLMs), but real-world deployment imposes a fixed per-query token budget that varies across settings. Existing tree-search policies are largely budget-agnostic, treating the budget as a termination condition, which can lead to late-stage over-branching or premature termination. We propose {Budget-Guided MCTS} (BG-MCTS), a tree-search decoding algorithm that aligns its search policy with the remaining token budget: it starts with broad exploration, then prioritizes refinement and answer completion as the budget depletes while reducing late-stage branching from shallow nodes. BG-MCTS consistently outperforms budget-agnostic tree-search baselines across different budgets on MATH500 and AIME24/25 with open-weight LLMs.

S255N is a luminous far-infrared source that contains many indications of active star formation but lacks a prominent near-infrared stellar cluster. We present mid-infrared through radio observations aimed at exploring the evolutionary state of this region. Our observations include 1.3mm continuum and spectral line data from the Submillimeter Array, VLA 3.6cm continuum and 1.3cm water maser data, and multicolor IRAC images from the Spitzer Space Telescope. The cometary morphology of the previously-known UCHII region G192.584-0.041 is clearly revealed in our sensitive, multi-configuration 3.6cm images. The 1.3mm continuum emission has been resolved into three compact cores, all of which are dominated by dust emission and have radii < 7000AU. The mass estimates for these cores range from 6 to 35 Msun. The centroid of the brightest dust core (SMA1) is offset by 1.1'' (2800 AU) from the peak of the cometary UCHII region and exhibits the strongest HC3N, CN, and DCN line emission in the region. SMA1 also exhibits compact CH3OH, SiO, and H2CO emission and likely contains a young hot core. We find spatial and kinematic evidence that SMA1 may contain further multiplicity, with one of the components coincident with a newly-detected H2O maser. There are no mid-infrared point source counterparts to any of the dust cores, further suggesting an early evolutionary phase for these objects. The dominant mid-infrared emission is a diffuse, broadband component that traces the surface of the cometary UCHII region but is obscured by foreground material on its southern edge. An additional 4.5 micron linear feature emanating to the northeast of SMA1 is aligned with a cluster of methanol masers and likely traces a outflow from a protostar within SMA1. Our observations provide direct evidence that S255N is forming a cluster of intermediate to high-mass stars.

Motivation: The development of novel compounds targeting proteins of interest is one of the most important tasks in the pharmaceutical industry. Deep generative models have been applied to targeted molecular design and have shown promising results. Recently, target-specific molecule generation has been viewed as a translation between the protein language and the chemical language. However, such a model is limited by the availability of interacting protein-ligand pairs. On the other hand, large amounts of unlabeled protein sequences and chemical compounds are available and have been used to train language models that learn useful representations. In this study, we propose exploiting pretrained biochemical language models to initialize (i.e. warm start) targeted molecule generation models. We investigate two warm start strategies: (i) a one-stage strategy where the initialized model is trained on targeted molecule generation (ii) a two-stage strategy containing a pre-finetuning on molecular generation followed by target specific training. We also compare two decoding strategies to generate compounds: beam search and sampling. Results: The results show that the warm-started models perform better than a baseline model trained from scratch. The two proposed warm-start strategies achieve similar results to each other with respect to widely used metrics from benchmarks. However, docking evaluation of the generated compounds for a number of novel proteins suggests that the one-stage strategy generalizes better than the two-stage strategy. Additionally, we observe that beam search outperforms sampling in both docking evaluation and benchmark metrics for assessing compound quality. Availability and implementation: The source code is available at https://github.com/boun-tabi/biochemical-lms-for-drug-design and the materials are archived in Zenodo at https://doi.org/10.5281/zenodo.6832145

Nepali, a low-resource language, faces significant challenges in building an effective information retrieval system due to the unavailability of annotated data and computational linguistic resources. In this study, we attempt to address this gap by preparing a pair-structured Nepali Question-Answer dataset. We focus on Frequently Asked Questions (FAQs) for passport-related services, building a data set for training and evaluation of IR models. In our study, we have fine-tuned transformer-based embedding models for semantic similarity in question-answer retrieval. The fine-tuned models were compared with the baseline BM25. In addition, we implement a hybrid retrieval approach, integrating fine-tuned models with BM25, and evaluate the performance of the hybrid retrieval. Our results show that the fine-tuned SBERT-based models outperform BM25, whereas multilingual E5 embedding-based models achieve the highest retrieval performance among all evaluated models.

Learned sparse retrieval systems aim to combine the effectiveness of contextualized language models with the scalability of conventional data structures such as inverted indexes. Nevertheless, the indexes generated by these systems exhibit significant deviations from the ones that use traditional retrieval models, leading to a discrepancy in the performance of existing query optimizations that were specifically developed for traditional structures. These disparities arise from structural variations in query and document statistics, including sub-word tokenization, leading to longer queries, smaller vocabularies, and different score distributions within posting lists. This paper introduces Block-Max Pruning (BMP), an innovative dynamic pruning strategy tailored for indexes arising in learned sparse retrieval environments. BMP employs a block filtering mechanism to divide the document space into small, consecutive document ranges, which are then aggregated and sorted on the fly, and fully processed only as necessary, guided by a defined safe early termination criterion or based on approximate retrieval requirements. Through rigorous experimentation, we show that BMP substantially outperforms existing dynamic pruning strategies, offering unparalleled efficiency in safe retrieval contexts and improved tradeoffs between precision and efficiency in approximate retrieval tasks.

Results are presented from searches for the standard model Higgs boson in proton-proton collisions at sqrt(s) = 7 and 8 TeV in the Compact Muon Solenoid experiment at the LHC, using data samples corresponding to integrated luminosities of up to 5.1 inverse femtobarns at 7 TeV and 5.3 inverse femtobarns at 8 TeV. The search is performed in five decay modes: gamma gamma, ZZ, WW, tau tau, and b b-bar. An excess of events is observed above the expected background, with a local significance of 5.0 standard deviations, at a mass near 125 GeV, signalling the production of a new particle. The expected significance for a standard model Higgs boson of that mass is 5.8 standard deviations. The excess is most significant in the two decay modes with the best mass resolution, gamma gamma and ZZ; a fit to these signals gives a mass of 125.3 +/- 0.4 (stat.) +/- 0.5 (syst.) GeV. The decay to two photons indicates that the new particle is a boson with spin different from one.

Developing effective biomedical retrieval models is important for excelling at knowledge-intensive biomedical tasks but still challenging due to the deficiency of sufficient publicly annotated biomedical data and computational resources. We present BMRetriever, a series of dense retrievers for enhancing biomedical retrieval via unsupervised pre-training on large biomedical corpora, followed by instruction fine-tuning on a combination of labeled datasets and synthetic pairs. Experiments on 5 biomedical tasks across 11 datasets verify BMRetriever's efficacy on various biomedical applications. BMRetriever also exhibits strong parameter efficiency, with the 410M variant outperforming baselines up to 11.7 times larger, and the 2B variant matching the performance of models with over 5B parameters. The training data and model checkpoints are released at https://huggingface.co/BMRetriever to ensure transparency, reproducibility, and application to new domains.

We search for dark matter (DM) annihilating subhalos of the Milky Way halo among the Fermi Large Area Telescope (LAT) unassociated sources. We construct, for the first time, a statistical model of the unassociated sources at latitudes above 10 degrees. The latter is built as a combination of both DM annihilation subhalos as well as Galactic and extragalactic astrophysical components. The astrophysical components are constructed based on distributions of associated sources, while the distribution of DM subhalos is derived from Monte Carlo simulations. In this model we take into account the differences in the distributions of associated and unassociated sources including both covariate and prior probability shifts (both being forms of ``dataset shifts''). Previous searches of DM subhalos were based on classify-and-count strategies, while the approach adopted in this work is based on quantification learning, which allows one to determine a well-defined statistical interpretation of the contribution of a population of DM subhalos to the unassociated Fermi-LAT sources. In the bb annihilation channel and for a range of DM masses from 10 GeV to 1 TeV, we don't find a significant contribution from DM subhalos and derive a statistical 95% confidence upper limit on the DM annihilation cross section in this channel. While the derived limits are consistent with previous classify-and-count approaches, our generative statistical model opens new avenues for population studies of Fermi-LAT sources and, more generally, for searches of anomalies on top of backgrounds in presence of statistical and systematic uncertainties.

Current pre-trained language model approaches to information retrieval can be broadly divided into two categories: sparse retrievers (to which belong also non-neural approaches such as bag-of-words methods, e.g., BM25) and dense retrievers. Each of these categories appears to capture different characteristics of relevance. Previous work has investigated how relevance signals from sparse retrievers could be combined with those from dense retrievers via interpolation. Such interpolation would generally lead to higher retrieval effectiveness. In this paper we consider the problem of combining the relevance signals from sparse and dense retrievers in the context of Pseudo Relevance Feedback (PRF). This context poses two key challenges: (1) When should interpolation occur: before, after, or both before and after the PRF process? (2) Which sparse representation should be considered: a zero-shot bag-of-words model (BM25), or a learnt sparse representation? To answer these questions we perform a thorough empirical evaluation considering an effective and scalable neural PRF approach (Vector-PRF), three effective dense retrievers (ANCE, TCTv2, DistillBERT), and one state-of-the-art learnt sparse retriever (uniCOIL). The empirical findings from our experiments suggest that, regardless of sparse representation and dense retriever, interpolation both before and after PRF achieves the highest effectiveness across most datasets and metrics.

Recent work on open domain question answering (QA) assumes strong supervision of the supporting evidence and/or assumes a blackbox information retrieval (IR) system to retrieve evidence candidates. We argue that both are suboptimal, since gold evidence is not always available, and QA is fundamentally different from IR. We show for the first time that it is possible to jointly learn the retriever and reader from question-answer string pairs and without any IR system. In this setting, evidence retrieval from all of Wikipedia is treated as a latent variable. Since this is impractical to learn from scratch, we pre-train the retriever with an Inverse Cloze Task. We evaluate on open versions of five QA datasets. On datasets where the questioner already knows the answer, a traditional IR system such as BM25 is sufficient. On datasets where a user is genuinely seeking an answer, we show that learned retrieval is crucial, outperforming BM25 by up to 19 points in exact match.

With the rapid spread of retrieval-augmented generation and semantic search, choosing the right embedding and retrieval configuration is increasingly hard. Large retrieval benchmarks are comprehensive but too heavy to rerun during development, and there is little infrastructure for comparing production settings--dimensionality reduction, quantization, reranking--across many models under identical conditions. We present HAKARI-Bench, a lightweight benchmark that reconstructs existing retrieval suites into small datasets (Nano-sets): 35 benchmarks and 551 tasks across 43 languages in a unified format, enabling same-condition, model-agnostic comparison of five retrieval families (BM25, dense, sparse, late interaction, rerankers) and their efficiency variants. Across 55 models, its overall ranking reproduces the official MTEB retrieval v2, MMTEB v2 retrieval, and English BEIR (full) at Spearman >0.97. HAKARI-Bench does not replace full evaluation; it enables rapid model selection, regression detection, and reading the quality-efficiency Pareto frontier. Code, data, and leaderboard are released under the MIT license.

Process supervision, i.e., evaluating each step, is critical for complex large language model (LLM) reasoning and test-time searching with increased inference compute. Existing approaches, represented by process reward models (PRMs), primarily focus on rewarding signals up to the current step, exhibiting a one-directional nature and lacking a mechanism to model the distance to the final target. To address this problem, we draw inspiration from the A* algorithm, which states that an effective supervisory signal should simultaneously consider the incurred cost and the estimated cost for reaching the target. Building on this key insight, we introduce BiRM, a novel process supervision model that not only evaluates the correctness of previous steps but also models the probability of future success. We conduct extensive experiments on mathematical reasoning tasks and demonstrate that BiRM provides more precise evaluations of LLM reasoning steps, achieving an improvement of 3.1% on Gaokao2023 over PRM under the Best-of-N sampling method. Besides, in search-based strategies, BiRM provides more comprehensive guidance and outperforms ORM by 5.0% and PRM by 3.8% respectively on MATH-500.

The burgeoning integration of 3D medical imaging into healthcare has led to a substantial increase in the workload of medical professionals. To assist clinicians in their diagnostic processes and alleviate their workload, the development of a robust system for retrieving similar case studies presents a viable solution. While the concept holds great promise, the field of 3D medical text-image retrieval is currently limited by the absence of robust evaluation benchmarks and curated datasets. To remedy this, our study presents a groundbreaking dataset, BIMCV-R (This dataset will be released upon acceptance.), which includes an extensive collection of 8,069 3D CT volumes, encompassing over 2 million slices, paired with their respective radiological reports. Expanding upon the foundational work of our dataset, we craft a retrieval strategy, MedFinder. This approach employs a dual-stream network architecture, harnessing the potential of large language models to advance the field of medical image retrieval beyond existing text-image retrieval solutions. It marks our preliminary step towards developing a system capable of facilitating text-to-image, image-to-text, and keyword-based retrieval tasks.

We assessed the performance of commercial Large Language Models (LLMs) GPT-3.5-Turbo and GPT-4 on tasks from the 2023 BioASQ challenge. In Task 11b Phase B, which is focused on answer generation, both models demonstrated competitive abilities with leading systems. Remarkably, they achieved this with simple zero-shot learning, grounded with relevant snippets. Even without relevant snippets, their performance was decent, though not on par with the best systems. Interestingly, the older and cheaper GPT-3.5-Turbo system was able to compete with GPT-4 in the grounded Q&A setting on factoid and list answers. In Task 11b Phase A, focusing on retrieval, query expansion through zero-shot learning improved performance, but the models fell short compared to other systems. The code needed to rerun these experiments is available through GitHub.

In this paper, we present the SALAMANDRATA family of models, an improved iteration of SALAMANDRA LLMs (Gonzalez-Agirre et al., 2025) specifically trained to achieve strong performance in translation-related tasks for 38 European languages. SALAMANDRATA comes in two scales: 2B and 7B parameters. For both versions, we applied the same training recipe with a first step of continual pre-training on parallel data, and a second step of supervised fine-tuning on high-quality instructions. The BSC submission to the WMT25 General Machine Translation shared task is based on the 7B variant of SALAMANDRATA. We first adapted the model vocabulary to support the additional non-European languages included in the task. This was followed by a second phase of continual pre-training and supervised fine-tuning, carefully designed to optimize performance across all translation directions for this year's shared task. For decoding, we employed two quality-aware strategies: Minimum Bayes Risk Decoding and Tuned Re-ranking using COMET and COMET-KIWI respectively. We publicly release both the 2B and 7B versions of SALAMANDRATA, along with the newer SALAMANDRATA-V2 model, on Hugging Face1

We present AutoIndex, a framework for learning representation programs: executable transformations that map raw documents into the representations exposed to a retrieval system. Rather than tuning retrievers, rerankers, or a small set of preprocessing hyperparameters, AutoIndex searches over programs that slice, enrich, normalize, reweight, or reorganize documents before indexing. At each iteration, AutoIndex performs validation-guided program search, in which agents diagnose failures of the current program and synthesize candidate updates, retaining only updates that improve retrieval quality under the resulting index. We evaluate AutoIndex on CRUMB, a benchmark of heterogeneous retrieval tasks, with BM25 held fixed across all experiments. The learned programs improve recall over a static full-document BM25 baseline on all 8 tasks, with average gains of +8.4% in Recall@100 and +8.3% in nDCG@10, and largest gains of +30.5% in Recall@100 and +43.6% in nDCG@10. These results suggest that document representation should not be treated as a fixed preprocessing choice made before retrieval begins, but as an explicit optimization target. Code to reproduce our results is available at https://github.com/auto-index/autoindex.

We present BenCzechMark (BCM), the first comprehensive Czech language benchmark designed for large language models, offering diverse tasks, multiple task formats, and multiple evaluation metrics. Its scoring system is grounded in statistical significance theory and uses aggregation across tasks inspired by social preference theory. Our benchmark encompasses 50 challenging tasks, with corresponding test datasets, primarily in native Czech, with 11 newly collected ones. These tasks span 8 categories and cover diverse domains, including historical Czech news, essays from pupils or language learners, and spoken word. Furthermore, we collect and clean BUT-Large Czech Collection, the largest publicly available clean Czech language corpus, and use it for (i) contamination analysis, (ii) continuous pretraining of the first Czech-centric 7B language model, with Czech-specific tokenization. We use our model as a baseline for comparison with publicly available multilingual models. Lastly, we release and maintain a leaderboard, with existing 44 model submissions, where new model submissions can be made at https://huggingface.co/spaces/CZLC/BenCzechMark.

Medical systematic reviews can be very costly and resource intensive. We explore how Large Language Models (LLMs) can support and be trained to perform literature screening when provided with a detailed set of selection criteria. Specifically, we instruction tune LLaMA and Guanaco models to perform abstract screening for medical systematic reviews. Our best model, Bio-SIEVE, outperforms both ChatGPT and trained traditional approaches, and generalises better across medical domains. However, there remains the challenge of adapting the model to safety-first scenarios. We also explore the impact of multi-task training with Bio-SIEVE-Multi, including tasks such as PICO extraction and exclusion reasoning, but find that it is unable to match single-task Bio-SIEVE's performance. We see Bio-SIEVE as an important step towards specialising LLMs for the biomedical systematic review process and explore its future developmental opportunities. We release our models, code and a list of DOIs to reconstruct our dataset for reproducibility.

We consider the large-scale query-document retrieval problem: given a query (e.g., a question), return the set of relevant documents (e.g., paragraphs containing the answer) from a large document corpus. This problem is often solved in two steps. The retrieval phase first reduces the solution space, returning a subset of candidate documents. The scoring phase then re-ranks the documents. Critically, the retrieval algorithm not only desires high recall but also requires to be highly efficient, returning candidates in time sublinear to the number of documents. Unlike the scoring phase witnessing significant advances recently due to the BERT-style pre-training tasks on cross-attention models, the retrieval phase remains less well studied. Most previous works rely on classic Information Retrieval (IR) methods such as BM-25 (token matching + TF-IDF weights). These models only accept sparse handcrafted features and can not be optimized for different downstream tasks of interest. In this paper, we conduct a comprehensive study on the embedding-based retrieval models. We show that the key ingredient of learning a strong embedding-based Transformer model is the set of pre-training tasks. With adequately designed paragraph-level pre-training tasks, the Transformer models can remarkably improve over the widely-used BM-25 as well as embedding models without Transformers. The paragraph-level pre-training tasks we studied are Inverse Cloze Task (ICT), Body First Selection (BFS), Wiki Link Prediction (WLP), and the combination of all three.

The current generation of large language models (LLMs) is typically designed for broad, general-purpose applications, while domain-specific LLMs, especially in vertical fields like medicine, remain relatively scarce. In particular, the development of highly efficient and practical LLMs for the medical domain is challenging due to the complexity of medical knowledge and the limited availability of high-quality data. To bridge this gap, we introduce Baichuan-M1, a series of large language models specifically optimized for medical applications. Unlike traditional approaches that simply continue pretraining on existing models or apply post-training to a general base model, Baichuan-M1 is trained from scratch with a dedicated focus on enhancing medical capabilities. Our model is trained on 20 trillion tokens and incorporates a range of effective training methods that strike a balance between general capabilities and medical expertise. As a result, Baichuan-M1 not only performs strongly across general domains such as mathematics and coding but also excels in specialized medical fields. We have open-sourced Baichuan-M1-14B, a mini version of our model, which can be accessed through the following links.

A companion to the release of the latest version of the SPLADE library. We describe changes to the training structure and present our latest series of models -- SPLADE-v3. We compare this new version to BM25, SPLADE++, as well as re-rankers, and showcase its effectiveness via a meta-analysis over more than 40 query sets. SPLADE-v3 further pushes the limit of SPLADE models: it is statistically significantly more effective than both BM25 and SPLADE++, while comparing well to cross-encoder re-rankers. Specifically, it gets more than 40 MRR@10 on the MS MARCO dev set, and improves by 2% the out-of-domain results on the BEIR benchmark.

We present a novel method for measuring |V_{cb}| at the LHC using an advanced boosted-jet tagger to identify "bc signatures". By associating boosted W rightarrow bc signals with bc-matched jets from top-quark decays, we enable an in-situ calibration of the tagger. This approach significantly suppresses backgrounds while reducing uncertainties in flavor tagging efficiencies -- key to improving measurement precision. Our study is enabled by the development of realistic, AI-based large- and small-radius taggers, Sophon and the newly introduced SophonAK4, validated to match ATLAS and CMS's state-of-the-art taggers. The method complements the conventional small radius jet approach and enables a ~30% improvement in |V_{cb}| precision under HL-LHC projections. As a byproduct, it enhances H^{pm} rightarrow bc search sensitivity by a factor of 2--5 over the recent ATLAS result based on Run 2 data. Our work offers a new perspective for the precision |V_{cb}| measurement and highlights the potential of using advanced tagging models to probe unexplored boosted regimes at the LHC.

Over the next five years, the Dark Energy Spectroscopic Instrument (DESI) will use 10 spectrographs with 5000 fibers on the 4m Mayall Telescope at Kitt Peak National Observatory to conduct the first Stage-IV dark energy galaxy survey. At z < 0.6, the DESI Bright Galaxy Survey (BGS) will produce the most detailed map of the Universe during the dark energy dominated epoch with redshifts of >10 million galaxies over 14,000 deg^2. In this work, we present and validate the final BGS target selection and survey design. From the Legacy Surveys, BGS will target a r < 19.5 magnitude-limited sample (BGS Bright); a fainter 19.5 < r < 20.175 sample, color-selected to have high redshift efficiency (BGS Faint); and a smaller low-z quasar sample. BGS will observe these targets using exposure times, scaled to achieve uniform completeness, and visit each point on the footprint three times. We use observations from the Survey Validation programs conducted prior to the main survey along with realistic simulations to show that BGS can complete its strategy and make optimal use of `bright' time. We demonstrate that BGS targets have stellar contamination <1% and that their densities do not depend strongly on imaging properties. We also confirm that BGS Bright will achieve >80% fiber assignment efficiency. Finally, we show that BGS Bright and Faint will achieve >95% redshift success rates with no significant dependence on observing conditions. BGS meets the requirements for an extensive range of scientific applications. BGS will yield the most precise Baryon Acoustic Oscillations and Redshift-Space Distortions measurements at z < 0.4. It also presents opportunities to exploit new methods that require highly complete and dense galaxy samples (e.g. N-point statistics, multi-tracers). BGS further provides a powerful tool to study galaxy populations and the relations between galaxies and dark matter.

In recent years, the application of Large Language Models (LLMs) in healthcare has shown significant promise in improving the accessibility and dissemination of medical knowledge. This paper presents a detailed study of various LLMs trained on the MedQuAD medical question-answering dataset, with a focus on identifying the most effective model for providing accurate medical information. Among the models tested, the Sentence-t5 combined with Mistral 7B demonstrated superior performance, achieving a precision score of 0.762. This model's enhanced capabilities are attributed to its advanced pretraining techniques, robust architecture, and effective prompt construction methodologies. By leveraging these strengths, the Sentence-t5 + Mistral 7B model excels in understanding and generating precise medical answers. Our findings highlight the potential of integrating sophisticated LLMs in medical contexts to facilitate efficient and accurate medical knowledge retrieval, thus significantly enhancing patient education and support.

Boolean query construction is often critical for medical systematic review literature search. To create an effective Boolean query, systematic review researchers typically spend weeks coming up with effective query terms and combinations. One challenge to creating an effective systematic review Boolean query is the selection of effective MeSH Terms to include in the query. In our previous work, we created neural MeSH term suggestion methods and compared them to state-of-the-art MeSH term suggestion methods. We found neural MeSH term suggestion methods to be highly effective. In this demonstration, we build upon our previous work by creating (1) a Web-based MeSH term suggestion prototype system that allows users to obtain suggestions from a number of underlying methods and (2) a Python library that implements ours and others' MeSH term suggestion methods and that is aimed at researchers who want to further investigate, create or deploy such type of methods. We describe the architecture of the web-based system and how to use it for the MeSH term suggestion task. For the Python library, we describe how the library can be used for advancing further research and experimentation, and we validate the results of the methods contained in the library on standard datasets. Our web-based prototype system is available at http://ielab-mesh-suggest.uqcloud.net, while our Python library is at https://github.com/ielab/meshsuggestlib.

In Africa, and the world at large, there is an increasing focus on developing Neural Machine Translation (NMT) systems to overcome language barriers. NMT for Low-resource language is particularly compelling as it involves learning with limited labelled data. However, obtaining a well-aligned parallel corpus for low-resource languages can be challenging. The disparity between the technological advancement of a few global languages and the lack of research on NMT for local languages in Chad is striking. End-to-end NMT trials on low-resource Chad languages have not been attempted. Additionally, there is a dearth of online and well-structured data gathering for research in Natural Language Processing, unlike some African languages. However, a guided approach for data gathering can produce bitext data for many Chadian language translation pairs with well-known languages that have ample data. In this project, we created the first sba-Fr Dataset, which is a corpus of Ngambay-to-French translations, and fine-tuned three pre-trained models using this dataset. Our experiments show that the M2M100 model outperforms other models with high BLEU scores on both original and original+synthetic data. The publicly available bitext dataset can be used for research purposes.

We present a catalog of 34 new candidate (13 high confidence) isolated, young stellar systems within the Virgo galaxy cluster identified through a citizen science search of public optical and ultraviolet imaging. "Blue blobs" are a class of blue, faint, isolated, extremely low stellar mass, and metal-rich star-forming clouds embedded in the hot intracluster medium of the Virgo cluster. Only six blue blobs were known previously and here we confirm an additional six of our candidates through velocity and metallicity measurements from follow-up optical spectroscopy on the Hobby-Eberly Telescope (HET). Our 13 high confidence candidates (including the six confirmed) have properties consistent with prior known blue blobs and are inconsistent with being low-mass galaxies. Most candidates are concentrated in relatively dense regions, roughly following filamentary structures within the cluster, but avoiding its center. Three of our candidates are likely the stellar counterparts of known 'optically dark' clouds of neutral hydrogen in the cluster, while a further four are widely separated extensions to previously known blue blobs. The properties of our new candidates are consistent with previous conclusions that blue blobs likely originated from ram pressure stripping events, however, their locations in velocity--projected cluster-centric radius phase-space imply that their parent galaxies are not on their first infall into the cluster. Through our ongoing follow-up program with HET we aim to confirm additional candidates, however, detailed understanding of the stellar populations and star formation histories of blue blobs will require JWST observations.

Modern Greek is absent from NVIDIA's Nemotron retrieval models and from major multilingual retrieval benchmarks, despite being important for retrieval-augmented generation (RAG) in legal, energy, financial, and medical applications. We present an end-to-end adaptation of the Nemotron retrieval stack for Modern Greek, including corpus mining, synthetic supervision, retrieval model training, reranker adaptation, reader fine-tuning, and a new benchmark called HERA. Our study shows that a parameter-free BM25 baseline outperforms several off-the-shelf multilingual dense retrieval models on specialist Greek corpora. After fine-tuning on 65,773 Greek retrieval pairs, a Nemotron 1B embedder improves nDCG@10 from 0.362 to 0.835 and substantially outperforms its unadapted counterpart. The learned language competence transfers to general-domain Greek, although the advantage over BM25 remains domain-dependent. We further adapt a cross-encoder reranker and demonstrate consistent improvements across specialist domains. Finally, we LoRA-tune a Nemotron 30B-A3B mixture-of-experts reader for grounded generation, increasing judged answer correctness from 29.4% to 66.9% while significantly improving faithfulness and citation quality. We also introduce HERA, the first large-scale Greek benchmark for retrieval-augmented generation, and release our adapted models and benchmark to support future research on Greek-language RAG systems.

State-space models (SSMs) have recently demonstrated competitive performance to transformers at large-scale language modeling benchmarks while achieving linear time and memory complexity as a function of sequence length. Mamba, a recently released SSM model, shows impressive performance in both language modeling and long sequence processing tasks. Simultaneously, mixture-of-expert (MoE) models have shown remarkable performance while significantly reducing the compute and latency costs of inference at the expense of a larger memory footprint. In this paper, we present BlackMamba, a novel architecture that combines the Mamba SSM with MoE to obtain the benefits of both. We demonstrate that BlackMamba performs competitively against both Mamba and transformer baselines, and outperforms in inference and training FLOPs. We fully train and open-source 340M/1.5B and 630M/2.8B BlackMamba models on 300B tokens of a custom dataset. We show that BlackMamba inherits and combines both of the benefits of SSM and MoE architectures, combining linear-complexity generation from SSM with cheap and fast inference from MoE. We release all weights, checkpoints, and inference code open-source. Inference code at: https://github.com/Zyphra/BlackMamba

Large language models (LLMs) trained on text demonstrated remarkable results on natural language processing (NLP) tasks. These models have been adapted to decipher the language of DNA, where sequences of nucleotides act as "words" that encode genomic functions. However, the genome differs fundamentally from natural language, as it lacks clearly defined words or a consistent grammar. Although DNA language models (DNALMs) such as DNABERT, GENA-LM have achieved high level of performance on genome-related biological tasks, these models do not encode biological functions in the presence of sequence variations. To address this problem, we pre-train foundation models that effectively integrate sequence variations, in particular Single Nucleotide Polymorphisms (SNPs), as they underlie important biological functions. Specifically, we use ModernBERT to pre-train two different Biomedical Foundation Models (BMFM), namely, BMFM-DNA-REF in which the model is trained with sequences of varying lengths along with their reverse complements derived from the reference genome and BMFM-DNA-SNP in which the model is trained with sequences created using a novel representation scheme that encodes sequence variations. Our findings indicate that integrating sequence variations into DNALMs helps capture the biological functions as seen in improvements on all fine-tuning tasks. To explore the model's practical utility, we experimented with various strategies for SNP imputation on promoter detection task introduced in DNABERT-2. However, we acknowledge that the current benchmarks are limited in their ability to fully evaluate these models. To enable more comprehensive assessment in the future and encourage community contributions, we release our models through HuggingFace and the code to reproduce the results at https://github.com/BiomedSciAI/biomed-multi-omic

Transcriptomic foundation models (TFMs) have recently emerged as powerful tools for analyzing gene expression in cells and tissues, supporting key tasks such as cell-type annotation, batch correction, and perturbation prediction. However, the diversity of model implementations and training strategies across recent TFMs, though promising, makes it challenging to isolate the contribution of individual design choices or evaluate their potential synergies. This hinders the field's ability to converge on best practices and limits the reproducibility of insights across studies. We present BMFM-RNA, an open-source, modular software package that unifies diverse TFM pretraining and fine-tuning objectives within a single framework. Leveraging this capability, we introduce a novel training objective, whole cell expression decoder (WCED), which captures global expression patterns using an autoencoder-like CLS bottleneck representation. In this paper, we describe the framework, supported input representations, and training objectives. We evaluated four model checkpoints pretrained on CELLxGENE using combinations of masked language modeling (MLM), WCED and multitask learning. Using the benchmarking capabilities of BMFM-RNA, we show that WCED-based models achieve performance that matches or exceeds state-of-the-art approaches like scGPT across more than a dozen datasets in both zero-shot and fine-tuning tasks. BMFM-RNA, available as part of the biomed-multi-omics project ( https://github.com/BiomedSciAI/biomed-multi-omic ), offers a reproducible foundation for systematic benchmarking and community-driven exploration of optimal TFM training strategies, enabling the development of more effective tools to leverage the latest advances in AI for understanding cell biology.

If autoresearch is itself a form of research, then autoresearch can be applied to research itself. We present Bilevel Autoresearch, a bilevel framework in which an outer autoresearch loop improves an inner autoresearch loop by reading its code and traces, identifying bottlenecks, and generating injectable Python search mechanisms at runtime. The inner loop optimizes task performance; the outer loop optimizes how the inner loop searches. Both loops use the same LLM, so improvements come from the bilevel architecture rather than a stronger meta-level model, although the outer loop consumes additional inference and wall-clock budget. On Karpathy's GPT pretraining benchmark, the meta-autoresearch outer loop achieves a 5x improvement over the standard inner loop alone (-0.045 vs. -0.009 val_bpb), while parameter-level adjustment without mechanism change yields no reliable gain. The outer loop instantiates mechanisms from adjacent search domains, including combinatorial optimization, multi-armed bandits, and design of experiments, without human specification of the final mechanism design. Trace analysis suggests that these mechanisms break deterministic search patterns and force exploration of directions the LLM's priors avoid. The experiments demonstrate, on this benchmark, a first bilevel step: an outer loop improves the search behavior of an inner loop. Code is the mechanism carrier in this implementation, but skills, prompts, workflows, evaluators, domain principles, world-model assumptions, and memory schemas can also encode mechanisms that shape future agent behavior. This suggests a path toward recursive bootstrapping, where mechanisms discovered for the inner loop can be fed back to improve the meta-level loop itself.

The development of accurate and efficient machine learning models for predicting the structure and properties of molecular crystals has been hindered by the scarcity of publicly available datasets of structures with property labels. To address this challenge, we introduce the Open Molecular Crystals 2025 (OMC25) dataset, a collection of over 27 million molecular crystal structures containing 12 elements and up to 300 atoms in the unit cell. The dataset was generated from dispersion-inclusive density functional theory (DFT) relaxation trajectories of over 230,000 randomly generated molecular crystal structures of around 50,000 organic molecules. OMC25 comprises diverse chemical compounds capable of forming different intermolecular interactions and a wide range of crystal packing motifs. We provide detailed information on the dataset's construction, composition, structure, and properties. To demonstrate the quality and use cases of OMC25, we further trained and evaluated state-of-the-art open-source machine learning interatomic potentials. By making this dataset publicly available, we aim to accelerate the development of more accurate and efficient machine learning models for molecular crystals.

Large Language Models (LLMs) have rapidly become important tools in Biomedical and Health Informatics (BHI), enabling new ways to analyze data, treat patients, and conduct research. This bibliometric review aims to provide a panoramic view of how LLMs have been used in BHI by examining research articles and collaboration networks from 2022 to 2023. It further explores how LLMs can improve Natural Language Processing (NLP) applications in various BHI areas like medical diagnosis, patient engagement, electronic health record management, and personalized medicine. To do this, our bibliometric review identifies key trends, maps out research networks, and highlights major developments in this fast-moving field. Lastly, it discusses the ethical concerns and practical challenges of using LLMs in BHI, such as data privacy and reliable medical recommendations. Looking ahead, we consider how LLMs could further transform biomedical research as well as healthcare delivery and patient outcomes. This bibliometric review serves as a resource for stakeholders in healthcare, including researchers, clinicians, and policymakers, to understand the current state and future potential of LLMs in BHI.

Navigating the capability--efficiency trade-off in Large Language Models (LLMs) requires approximating a high-quality Pareto set. Existing model merging research has focused predominantly on coarse model-level operators, which are easy to apply but offer limited control over the trade-off geometry. Layer-wise merging is more expressive, yet current methods still suffer from two bottlenecks: they treat the high-dimensional fusion space as an unstructured black box, and they rely on synchronous optimization despite highly uneven LLM evaluation latency. We propose Asynchronous Prior-guided Bayesian Model Merging (AP-BMM), which addresses these issues with a discrepancy-derived importance prior that initializes the surrogate geometry and an event-driven optimization loop built on pending-aware hypervolume improvement. Under a common evaluation budget, AP-BMM yields stronger Pareto-set approximations than both synchronous layer-wise baselines and representative model-level merging methods, with higher hypervolume and broader coverage of the trade-off frontier. Against the synchronous Bayesian baseline, it also achieves substantially shorter wall-clock time. Code: https://github.com/MiLab-HITSZ/AP-BMM.

We propose a novel method to probe the persistent hints of Lepton Flavour Universality violation observed in semileptonic B decays. Relying on the specific properties of the Belle II experiment, it consists in comparing the inclusive rates of Υ(4S) to e^pm μ^mp X, Υ(4S) to μ^pm τ_{rm had}^mp X and Υ(4S) to e^pm τ_{rm had}^mp X. We show that such a measurement can be directly related to the ratio R(X)_{τell} equiv Γ(bto X τν) / Γ(b to X ell ν) (ell=e or μ), once appropriate experimental cuts are applied to suppress the effects of neutral B mixing and leptons emitted through charm or tau decays. Such a measurement would thus constitute an additional and potentially competitive probe of Lepton Flavour Universality in bto cellν transitions, complementary to existing exclusive measurements, accessible in the Belle II environment.

The Massive Multitask Language Understanding (MMLU) benchmark has been widely used to evaluate language models across various domains. However, existing MMLU datasets primarily focus on high-resource languages such as English, which leaves low-resource languages like Bengali underrepresented. In this paper, we introduce BnMMLU, a benchmark to evaluate the multitask language understanding capabilities of Bengali in language models. The dataset spans 23 domains, including science, humanities, mathematics and general knowledge and is structured in a multiple-choice format to assess factual knowledge, application-based problem-solving and reasoning abilities of language models. It consists of 138,949 question-option pairs. We benchmark several proprietary and open-source large language models (LLMs) on the BnMMLU test set. Additionally, we annotate the test set with three cognitive categories-factual knowledge, procedural application and reasoning-to gain deeper insights into model strengths and weaknesses across various cognitive tasks. The results reveal significant performance gaps, highlighting the need for improved pre-training and fine-tuning strategies tailored to Bengali data. We release the dataset and benchmark results to facilitate further research in this area.

This study investigates a specific form of positional bias, termed the Myopic Trap, where retrieval models disproportionately attend to the early parts of documents while overlooking relevant information that appears later. To systematically quantify this phenomenon, we propose a semantics-preserving evaluation framework that repurposes the existing NLP datasets into position-aware retrieval benchmarks. By evaluating the SOTA models of full retrieval pipeline, including BM25, embedding models, ColBERT-style late-interaction models, and reranker models, we offer a broader empirical perspective on positional bias than prior work. Experimental results show that embedding models and ColBERT-style models exhibit significant performance degradation when query-related content is shifted toward later positions, indicating a pronounced head bias. Notably, under the same training configuration, ColBERT-style approach show greater potential for mitigating positional bias compared to the traditional single-vector approach. In contrast, BM25 and reranker models remain largely unaffected by such perturbations, underscoring their robustness to positional bias. Code and data are publicly available at: www.github.com/NovaSearch-Team/RAG-Retrieval.

Brain MRI scans are often found in four modalities, consisting of T1-weighted with and without contrast enhancement (T1ce and T1w), T2-weighted imaging (T2w), and Flair. Leveraging complementary information from these different modalities enables models to learn richer, more discriminative features for understanding brain anatomy, which could be used in downstream tasks such as anomaly detection. However, in clinical practice, not all MRI modalities are always available due to various reasons. This makes missing modality generation a critical challenge in medical image analysis. In this paper, we propose SLaM-DiMM, a novel missing modality generation framework that harnesses the power of diffusion models to synthesize any of the four target MRI modalities from other available modalities. Our approach not only generates high-fidelity images but also ensures structural coherence across the depth of the volume through a dedicated coherence enhancement mechanism. Qualitative and quantitative evaluations on the BraTS-Lighthouse-2025 Challenge dataset demonstrate the effectiveness of the proposed approach in synthesizing anatomically plausible and structurally consistent results. Code is available at https://github.com/BheeshmSharma/SLaM-DiMM-MICCAI-BraTS-Challenge-2025.

Respiratory acoustic foundation models (FMs) are benchmarked exclusively on smartphone recordings, yet clinical deployment increasingly targets body-coupled (BC) wearables whose sensors attenuate high-frequency content through tissue and bone, leaving FM reliability uncharacterised. We introduce BCoughBench, evaluating five FMs (OPERA-CT/CE/GT, HeAR, M2D+Resp) on nine classification tasks (AUROC, sensitivity at 95% specificity, Expected Calibration Error) and three age regression tasks (MAE vs. a mean-predictor baseline) across five EBEN-simulated BC sensor conditions on five labeled cough datasets. Mean AUROC declines from 0.785 (smartphone) to 0.689-0.723, degrading most under temple vibration pickup (Δ = -0.096) and least under the soft in-ear (Δ = -0.062). No FM meets the clinical sensitivity threshold (Se@Sp95 geq 0.20) on most disease tasks under any BC sensor. Sex classification on the CIDRZ cohort collapses (AUROC 0.954 to 0.596-0.628, Δ = -0.341) while COVID detection is nearly unaffected (Δ = -0.004). Age regression is robust, improving under the forehead accelerometer on CoughVID (MAE 9.61 to 8.97 yr); HeAR leads on regression and demographic tasks, M2D+Resp on disease and characteristic tasks. BCoughBench provides a reproducible framework for FM evaluation under wearable conditions.